STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50013.1S23 ribosomal protein. (117 aa)    
Predicted Functional Partners:
AEI50014.1
Transketolase.
       0.773
AEI50015.1
Protein of unknown function DUF820.
       0.746
AEI50016.1
SMC domain protein.
       0.702
AEI50017.1
Hypothetical protein.
       0.702
AEI50018.1
Transketolase.
       0.642
AEI50011.1
Peptidase M23.
  
    0.555
AEI50012.1
Peroxiredoxin.
       0.551
AEI50019.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.496
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.