STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50021.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
AEI50019.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
 
    0.712
AEI50020.1
Hypothetical protein.
       0.678
AEI48234.1
Hypothetical protein.
  
     0.649
Runsl_5359
Endonuclease/exonuclease/phosphatase.
  
     0.539
AEI47253.1
Hypothetical protein.
  
     0.492
AEI47847.1
TonB-dependent receptor.
  
     0.487
AEI50018.1
Transketolase.
       0.449
AEI50011.1
Peptidase M23.
 
     0.434
AEI51922.1
Hypothetical protein.
  
     0.420
AEI50403.1
DNA/RNA non-specific endonuclease.
  
     0.417
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.