Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50033.1Hypothetical protein. (553 aa)    
Predicted Functional Partners:
AEI50032.1
Hypothetical protein.
 
     0.907
AEI51053.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.749
AEI48514.1
Hypothetical protein.
  
     0.629
AEI51150.1
Protein of unknown function DUF1080.
  
     0.584
AEI50034.1
Rhodanese-like protein.
       0.581
AEI48374.1
TonB-dependent receptor.
  
     0.567
AEI48038.1
Anti-sigma-K factor RskA.
  
     0.563
AEI50436.1
Hypothetical protein.
  
     0.550
AEI47545.1
Hypothetical protein.
 
     0.527
AEI49883.1
Gliding motility associated protein GldN.
  
     0.524
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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