STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50068.1Membrane protein oxaA. (626 aa)    
Predicted Functional Partners:
AEI48490.1
Protein-export membrane protein SecD.
  
 0.998
AEI48105.1
Preprotein translocase, SecY subunit.
  
 0.990
AEI50740.1
Preprotein translocase, SecG subunit.
  
 0.973
AEI49794.1
Protein translocase subunit secA.
 
 
 0.968
AEI49562.1
Preprotein translocase, YajC subunit.
 
 
 0.951
AEI51794.1
Signal recognition particle protein.
    
 0.949
AEI47958.1
Signal recognition particle-docking protein FtsY.
   
 
 0.940
AEI48122.1
Ribosomal protein L2.
   
 
 0.929
AEI48097.1
50S ribosomal protein L17.
 
 
 0.922
AEI50069.1
Transcription termination factor Rho.
 
    0.920
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.