STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50070.1Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. (232 aa)    
Predicted Functional Partners:
AEI50071.1
Alpha/beta hydrolase fold protein.
       0.819
AEI46461.1
Chromosomal replication initiator protein dnaA.
 
  
 0.717
AEI48099.1
Ribosomal protein S4.
  
 
 
 0.584
AEI51677.1
30S ribosomal protein S6.
 
 
 0.577
AEI49526.1
30S ribosomal protein S21.
  
 
 
 0.567
AEI48111.1
Ribosomal protein S8.
  
 
 
 0.554
AEI48112.1
30S ribosomal protein S14.
   
 
 0.553
AEI50439.1
30S ribosomal protein S16.
   
 
 0.504
AEI48835.1
Ribosomal protein S7.
  
 
 0.502
AEI47590.1
Ribosomal protein S2.
   
 
 0.496
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.