STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50098.1Orn/DAP/Arg decarboxylase 2. (493 aa)    
Predicted Functional Partners:
AEI49976.1
Agmatine deiminase.
    
 0.926
AEI48301.1
Argininosuccinate lyase.
     
 0.835
AEI49536.1
Arginine deiminase.
    
  0.816
AEI47039.1
acyl-CoA reductase.
  
   
 0.728
AEI51813.1
UDP-N-acetylglucosamine1- carboxyvinyltransferase.
 
    0.550
Runsl_2546
Hypothetical protein.
  
     0.546
AEI50097.1
Hypothetical protein.
       0.539
AEI46485.1
Hypothetical protein.
  
     0.470
AEI51569.1
NUDIX hydrolase.
 
     0.450
AEI51848.1
Diaminopimelate decarboxylase.
 
  
 0.450
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.