STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50132.1ATP-dependent exoDNAse (exonuclease V). (472 aa)    
Predicted Functional Partners:
AEI51928.1
UvrD/REP helicase.
 
 
 0.814
AEI47860.1
DNA polymerase III, beta subunit.
  
 
 0.795
AEI47242.1
3'-5' exonuclease, PolB.
   
 
 0.719
AEI48914.1
UvrD/REP helicase.
  
 
 0.624
AEI50131.1
Hypothetical protein.
       0.601
AEI48509.1
Cytoplasmic protein.
  
     0.595
AEI46535.1
SMC domain protein.
   
 
 0.580
AEI50133.1
Putative signal transduction protein with CBS domains.
       0.549
AEI47851.1
Hypothetical protein.
  
     0.521
AEI51034.1
DNA topoisomerase I.
   
 
 0.509
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.