Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEI50163.1D-amino-acid dehydrogenase. (415 aa)    
Predicted Functional Partners:
AEI51428.1
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.907
AEI49215.1
Histidinol-phosphate transaminase.
   
 
  0.900
AEI50172.1
Histidinol-phosphate aminotransferase.
   
 
  0.900
AEI51190.1
Histidinol-phosphate transaminase.
   
 
  0.900
AEI51193.1
Histidinol-phosphate transaminase.
   
 
  0.900
AEI51415.1
Aspartate transaminase.
     
 0.900
AEI48979.1
4-hydroxyproline epimerase.
 
   
 0.783
AEI47229.1
Dihydrodipicolinate synthase.
 
   
 0.739
AEI50214.1
Aldehyde dehydrogenase (NADP(+)).
 
  
 0.665
AEI50165.1
Proline racemase.
 
   
 0.558
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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