STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50165.1Proline racemase. (351 aa)    
Predicted Functional Partners:
AEI47359.1
Pyrroline-5-carboxylate reductase.
    
 0.914
AEI48352.1
Proline dehydrogenase.
    
 0.905
AEI50282.1
FAD dependent oxidoreductase.
    
 0.905
AEI50166.1
Ornithine cyclodeaminase.
 
   
 0.881
AEI47229.1
Dihydrodipicolinate synthase.
 
   
 0.762
Runsl_4230
Hypothetical protein.
 
     0.708
AEI50214.1
Aldehyde dehydrogenase (NADP(+)).
 
 
 
 0.571
AEI50163.1
D-amino-acid dehydrogenase.
 
   
 0.558
AEI50164.1
Hypothetical protein.
       0.527
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.