STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50182.1DNA repair protein RadA. (455 aa)    
Predicted Functional Partners:
AEI49566.1
Protein recA.
   
  
 0.909
AEI48297.1
Regulatory protein recX.
  
  
 0.898
AEI48914.1
UvrD/REP helicase.
  
  
 0.823
AEI48420.1
Thiamine-monophosphate kinase.
   
    0.702
AEI49279.1
UvrABC system protein C.
 
  
 0.669
AEI48486.1
DNA polymerase I.
 
   
 0.586
AEI50209.1
single-stranded-DNA-specific exonuclease RecJ.
 
  
 0.562
AEI51034.1
DNA topoisomerase I.
 
   
 0.531
AEI51677.1
30S ribosomal protein S6.
 
     0.527
AEI48400.1
Sigma 54 interacting domain protein.
  
   
 0.505
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.