STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50195.1Cupin 2 conserved barrel domain protein. (185 aa)    
Predicted Functional Partners:
AEI50199.1
Site-specific DNA-methyltransferase (adenine-specific).
  
    0.675
AEI50196.1
Hypothetical protein.
       0.661
AEI50197.1
Hypothetical protein.
       0.661
AEI50198.1
Helicase A859L.
       0.661
AEI50200.1
Type III restriction system methylase.
       0.661
AEI50201.1
5'-nucleotidase.
       0.661
AEI51068.1
Hypothetical protein.
  
    0.617
AEI51351.1
FkbM family methyltransferase.
  
     0.601
AEI49124.1
TetR family transcriptional regulator.
  
     0.576
AEI50193.1
Putative transcriptional regulator, Crp/Fnr family.
 
     0.503
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.