STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50205.15-oxoprolinase (ATP-hydrolyzing). (1246 aa)    
Predicted Functional Partners:
AEI47857.1
Gamma-glutamyltransferase.
 
  
 0.929
AEI51761.1
Gamma-glutamyltransferase.
    
 0.913
AEI47040.1
Carboxylate-amine ligase ybdK.
     
  0.900
AEI50656.1
Glutamate dehydrogenase (NAD(P)(+)).
  
 
 0.858
AEI50717.1
Glutamate synthase (ferredoxin).
    
 0.832
AEI47152.1
Phosphoribosylformylglycinamidine synthase 1.
    
  0.807
AEI47905.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
  
 
 0.805
AEI50716.1
Glutamate synthase, NADH/NADPH, small subunit.
    
  0.804
Runsl_1927
Glutamate--ammonia ligase.
     
 0.801
AEI49257.1
Glutamate--ammonia ligase.
     
 0.801
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.