STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50220.1Cell cycle protein. (427 aa)    
Predicted Functional Partners:
AEI50221.1
Penicillin-binding protein 2.
 
 0.989
AEI49811.1
Peptidoglycan glycosyltransferase.
 
 
 0.944
AEI48206.1
Cell cycle protein.
  
  
 
0.929
AEI48203.1
Hypothetical protein.
 
 
 0.928
AEI48205.1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
  
 0.858
AEI47458.1
Cell shape determining protein, MreB/Mrl family.
 
 
 0.849
AEI48204.1
UDP-N-acetylmuramate--L-alanine ligase.
 
  
 0.787
AEI50869.1
Hypothetical protein.
   
 
 0.769
AEI48652.1
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase.
 
  
 0.765
AEI51813.1
UDP-N-acetylglucosamine1- carboxyvinyltransferase.
 
   
 0.755
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.