STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50239.1OmpA/MotB domain protein. (521 aa)    
Predicted Functional Partners:
AEI51503.1
OmpA/MotB domain protein.
  
     0.728
AEI49448.1
OmpA/MotB domain protein.
  
     0.686
AEI51229.1
RagB/SusD domain-containing protein.
  
  
 0.666
AEI49218.1
OmpA/MotB domain protein.
  
     0.617
AEI49183.1
Chondroitin AC lyase.
 
    0.546
AEI48427.1
Hypothetical protein.
  
     0.541
AEI49201.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
 
   0.535
AEI47159.1
OmpA/MotB domain protein.
  
 
 0.530
AEI50322.1
NAD-dependent epimerase/dehydratase.
  
 
 0.524
AEI46636.1
Glycosyl transferase family 39.
  
     0.513
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.