STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50284.1Peptidase dimerization domain protein. (558 aa)    
Predicted Functional Partners:
AEI46851.1
Peptidase M20.
 
   
 0.670
AEI50285.1
Gluconate transporter.
       0.620
AEI47692.1
Hypothetical protein.
  
     0.586
AEI47693.1
TonB-dependent receptor plug.
  
     0.524
AEI46816.1
Peptidase M14 carboxypeptidase A.
 
     0.487
AEI48708.1
Amidohydrolase.
 
     0.485
AEI51865.1
Amidohydrolase.
 
     0.442
AEI47000.1
Beta-lactamase.
 
     0.430
AEI50286.1
ABC-type transporter, periplasmic subunit.
       0.422
AEI46698.1
Peptidase S9 prolyl oligopeptidase.
 
     0.417
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.