Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50287.1Hypothetical protein. (492 aa)    
Predicted Functional Partners:
AEI50286.1
ABC-type transporter, periplasmic subunit.
       0.771
AEI47220.1
Mg-chelatase subunit ChlI-like protein.
  
 
 0.765
AEI50311.1
Lipopolysaccharide biosynthesis protein.
  
     0.682
AEI51795.1
Protein of unknown function DUF303 acetylesterase.
  
    0.547
AEI50288.1
Hypothetical protein.
       0.520
AEI50285.1
Gluconate transporter.
       0.506
AEI47852.1
Hypothetical protein.
  
     0.488
AEI48005.1
Polysaccharide export protein.
 
     0.488
AEI50312.1
Soluble ligand binding domain protein.
 
     0.461
AEI48004.1
Hypothetical protein.
  
     0.460
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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