STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50300.1Glutamine--scyllo-inositol transaminase. (371 aa)    
Predicted Functional Partners:
Runsl_3943
Glycosyl transferase family 2.
  
    0.792
AEI50298.1
Methyltransferase FkbM family.
  
  
 0.790
AEI50297.1
Glycosyl transferase group 1.
  
    0.788
AEI50299.1
Glycosyl transferase group 1.
  
    0.788
AEI50443.1
Polysaccharide biosynthesis protein CapD.
  
 0.763
AEI50308.1
Transferase hexapeptide repeat containing protein.
  
 0.697
AEI49258.1
WxcM-like domain-containing protein.
 
  
 0.649
AEI50301.1
Hypothetical protein.
       0.536
AEI50309.1
Oxidoreductase domain protein.
  
 0.532
AEI47325.1
Putative nucleoside-diphosphate-sugar pyrophosphorylase.
  
  
 0.477
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.