STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50309.1Oxidoreductase domain protein. (338 aa)    
Predicted Functional Partners:
AEI47216.1
Nucleotide sugar dehydrogenase.
 
 
 0.937
AEI50308.1
Transferase hexapeptide repeat containing protein.
 
    0.848
AEI50310.1
Hypothetical protein.
       0.754
AEI50302.1
N-acetyl sugar amidotransferase.
 
    0.514
AEI50307.1
Polysaccharide biosynthesis protein.
  
    0.504
AEI50306.1
Methyltransferase FkbM family.
       0.490
AEI50300.1
Glutamine--scyllo-inositol transaminase.
  
 0.467
AEI50304.1
Imidazole glycerol phosphate synthase subunit hisH.
  
    0.449
AEI50305.1
Hypothetical protein.
       0.431
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.