STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50310.1Hypothetical protein. (427 aa)    
Predicted Functional Partners:
AEI50308.1
Transferase hexapeptide repeat containing protein.
  
  
 0.765
AEI50309.1
Oxidoreductase domain protein.
       0.754
AEI50307.1
Polysaccharide biosynthesis protein.
  
  
 0.648
AEI50311.1
Lipopolysaccharide biosynthesis protein.
  
  
 0.493
AEI50312.1
Soluble ligand binding domain protein.
  
  
 0.487
AEI47921.1
Capsular exopolysaccharide family.
  
  
 0.478
AEI50306.1
Methyltransferase FkbM family.
       0.478
AEI51021.1
Capsular exopolysaccharide family.
  
  
 0.478
AEI50443.1
Polysaccharide biosynthesis protein CapD.
  
  
 0.451
AEI49763.1
Sugar transferase.
  
  
 0.430
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.