STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50311.1Lipopolysaccharide biosynthesis protein. (355 aa)    
Predicted Functional Partners:
AEI50312.1
Soluble ligand binding domain protein.
 
 
 0.954
AEI48005.1
Polysaccharide export protein.
 
 
 0.892
AEI51001.1
Hypothetical protein.
  
     0.703
AEI50287.1
Hypothetical protein.
  
     0.682
AEI47182.1
VanZ family protein.
 
     0.526
AEI47919.1
Polysaccharide export protein.
  
 
 0.512
AEI50288.1
Hypothetical protein.
  
 
 0.512
AEI51022.1
Polysaccharide export protein.
  
 
 0.512
AEI51737.1
Peptidoglycan-binding lysin domain protein.
  
     0.502
AEI50310.1
Hypothetical protein.
  
  
 0.493
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.