STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50331.1Mandelate racemase/muconate lactonizing protein. (369 aa)    
Predicted Functional Partners:
AEI47443.1
o-succinylbenzoate--CoA ligase.
 
  0.995
AEI46631.1
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylatesynthase.
 
   
 0.798
AEI46838.1
Chorismate binding domain-containing protein.
 
   
 0.794
AEI47449.1
1,4-dihydroxy-2-naphthoateoctaprenyltransferase.
 
   
 0.756
AEI50087.1
Naphthoate synthase.
 
   
 0.742
AEI51713.1
Protein of unknown function DUF1599.
  
     0.657
AEI50330.1
Tetraacyldisaccharide 4'-kinase.
       0.587
AEI50892.1
Sporulation domain-containing protein.
  
     0.587
AEI51306.1
Hypothetical protein.
 
    0.564
AEI46589.1
Hypothetical protein.
  
     0.563
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.