STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50334.1OmpA/MotB domain protein. (605 aa)    
Predicted Functional Partners:
AEI46675.1
Hypothetical protein.
 
 
   0.863
AEI48772.1
Outer membrane chaperone Skp (OmpH).
 
 
 0.848
AEI47530.1
Outer membrane chaperone Skp (OmpH).
  
 
 0.796
AEI48771.1
Outer membrane chaperone Skp (OmpH).
  
 
 0.796
AEI49794.1
Protein translocase subunit secA.
    
 
 0.788
AEI46657.1
OmpA/MotB domain protein.
 
 
0.777
AEI48068.1
OmpA/MotB domain protein.
 
 
0.769
AEI47159.1
OmpA/MotB domain protein.
  
 
 0.628
AEI50335.1
Thrombospondin type 3 repeat-containing protein.
 
  
0.586
AEI51120.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
 
 0.571
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.