STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50336.1UbiA prenyltransferase. (282 aa)    
Predicted Functional Partners:
AEI50939.1
Naringenin-chalcone synthase.
   
 0.974
AEI50231.1
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
  
 0.761
AEI50400.1
Hypothetical protein.
  
     0.695
AEI50335.1
Thrombospondin type 3 repeat-containing protein.
       0.671
AEI50713.1
Sulfate transporter/antisigma-factor antagonist STAS.
  
     0.590
AEI50079.1
Hypothetical protein.
  
     0.589
AEI49561.1
Hypothetical protein.
  
     0.580
AEI51270.1
Hypothetical protein.
  
     0.568
AEI47514.1
Hypothetical protein.
  
     0.537
AEI50052.1
Hypothetical protein.
  
     0.535
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.