STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50369.1FAD dependent oxidoreductase. (382 aa)    
Predicted Functional Partners:
AEI50368.1
Haloacid dehalogenase domain protein hydrolase.
 
   
 0.941
AEI51786.1
Acetylornithine transaminase.
  
 
 0.924
Runsl_5144
(aminoalkyl)phosphonate N-acetyltransferase.
     
  0.900
AEI47594.1
Hypothetical protein.
 
     0.792
AEI49110.1
Helix-turn-helix domain protein.
 
  
 0.716
AEI50367.1
TonB-dependent receptor plug.
 
     0.659
AEI50413.1
Protein of unknown function DUF1565.
  
 
  0.597
AEI50364.1
Hypothetical protein.
 
     0.571
AEI50362.1
Metal dependent phosphohydrolase.
 
     0.570
AEI46886.1
Ferredoxin--NAD(+) reductase.
  
 
 0.530
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.