STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50387.1Lycopene beta and epsilon cyclase. (385 aa)    
Predicted Functional Partners:
AEI48885.1
Phytoene desaturase.
 
 
 0.937
AEI47808.1
Fatty acid hydroxylase.
 
  
 0.929
AEI46690.1
Lycopene beta and epsilon cyclase.
  
  
 
0.918
AEI49864.1
Fatty acid desaturase.
   
 
 0.905
AEI46694.1
Rhodopsin.
 
   
 0.538
AEI50734.1
Electron transfer flavoprotein alpha/beta-subunit.
  
 
 0.522
AEI48884.1
Squalene/phytoene synthase.
 
  
 0.433
AEI46565.1
Hypothetical protein.
  
     0.428
AEI50733.1
Electron transfer flavoprotein alpha subunit.
  
 
 0.411
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.