STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_4050Lipoyl synthase. (292 aa)    
Predicted Functional Partners:
AEI51309.1
Octanoyltransferase.
 
 0.998
AEI48210.1
Glycine cleavage system H protein.
 
 0.937
AEI51658.1
Dihydrolipoyllysine-residue succinyltransferase.
 
 
 0.801
AEI46685.1
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase.
 
 
 0.783
AEI49389.1
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase.
 
 
 0.773
AEI47455.1
Ribonucleoside-diphosphate reductase, alpha subunit.
 
    
 0.721
AEI50400.1
Hypothetical protein.
       0.656
AEI49438.1
Nitrogen-fixing NifU domain-containing protein.
  
 0.641
AEI50026.1
Nitrogen-fixing NifU domain-containing protein.
  
 0.641
AEI47575.1
Dihydrolipoamide dehydrogenase.
  
 0.639
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.