STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50403.1DNA/RNA non-specific endonuclease. (347 aa)    
Predicted Functional Partners:
AEI50714.1
Ribonuclease Z.
   
   0.770
AEI46886.1
Ferredoxin--NAD(+) reductase.
    
 
 0.642
AEI50404.1
HI0933 family protein.
       0.556
AEI51801.1
NADH-quinone oxidoreductase, F subunit.
   
    0.527
AEI50213.1
Nuclease A inhibitor family protein.
  
    0.509
AEI50021.1
Hypothetical protein.
  
     0.417
AEI48486.1
DNA polymerase I.
   
 
 0.405
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.