STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50413.1Protein of unknown function DUF1565. (785 aa)    
Predicted Functional Partners:
AEI50099.1
Glycerol kinase.
   
 0.755
AEI49029.1
Hypothetical protein.
 
     0.730
AEI49028.1
Hypothetical protein.
 
     0.725
AEI49038.1
Hypothetical protein.
 
     0.723
AEI50598.1
Alpha-glucosidase.
  
     0.698
AEI50369.1
FAD dependent oxidoreductase.
  
 
  0.635
AEI49192.1
Metallophosphoesterase.
 
 
   0.627
AEI47902.1
Hypothetical protein.
  
    0.616
AEI49605.1
Hypothetical protein.
  
     0.584
AEI47558.1
alanyl-tRNA synthetase.
  
 
 0.579
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.