STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50431.1tRNA/rRNA methyltransferase (SpoU). (261 aa)    
Predicted Functional Partners:
AEI49529.1
Iojap-like protein.
 
 
 
 0.767
AEI48125.1
50S ribosomal protein L3.
   
 
 0.764
AEI48097.1
50S ribosomal protein L17.
  
   0.746
AEI47592.1
Ribosomal protein L13.
  
 
 0.745
AEI47941.1
50S ribosomal protein L21.
   
 
 0.739
AEI48106.1
Ribosomal protein L15.
   
   0.735
AEI48240.1
Ribosomal protein L11.
   
   0.710
AEI51212.1
tRNA modification GTPase mnmE.
 
 
 
 0.705
AEI48114.1
Ribosomal protein L24.
  
   0.697
AEI49455.1
Chaperone protein dnaJ.
   
 
 0.696
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.