STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50441.1tRNA (guanine-N(1)-)-methyltransferase. (224 aa)    
Predicted Functional Partners:
AEI51704.1
50S ribosomal protein L19.
  
 0.993
AEI50440.1
Ribosome maturation factor rimM.
  
  
 0.986
AEI50439.1
30S ribosomal protein S16.
 
  
 0.981
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
 
  
 0.968
AEI48099.1
Ribosomal protein S4.
  
  
 0.954
AEI49393.1
NusA antitermination factor.
 
  
 0.945
AEI49394.1
Translation initiation factor IF-2.
 
  
 0.937
AEI47122.1
Translation elongation factor G.
 
  
 0.935
AEI48125.1
50S ribosomal protein L3.
  
  
 0.933
AEI48105.1
Preprotein translocase, SecY subunit.
  
  
 0.931
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.