STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50443.1Polysaccharide biosynthesis protein CapD. (645 aa)    
Predicted Functional Partners:
AEI51644.1
DegT/DnrJ/EryC1/StrS aminotransferase.
  
 0.946
AEI48144.1
Sugar transferase.
  
 0.945
AEI47921.1
Capsular exopolysaccharide family.
 
  
 0.845
AEI47937.1
GDP-mannose 4,6-dehydratase.
  
  
 0.845
AEI49164.1
Glutamine--scyllo-inositol transaminase.
  
 0.844
AEI49259.1
Glutamine--scyllo-inositol transaminase.
  
 0.841
AEI51021.1
Capsular exopolysaccharide family.
 
  
 0.839
AEI50300.1
Glutamine--scyllo-inositol transaminase.
  
 0.813
AEI48322.1
Glutamine--scyllo-inositol transaminase.
  
 0.765
AEI48001.1
DegT/DnrJ/EryC1/StrS aminotransferase.
  
 0.733
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.