STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50463.1Alanine racemase. (832 aa)    
Predicted Functional Partners:
AEI47451.1
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.
 
 0.985
AEI48192.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
 
 0.980
AEI46629.1
Alanine dehydrogenase.
  
 
 0.967
AEI51271.1
Alanine dehydrogenase.
  
 
 0.967
AEI49539.1
D-alanine--D-alanine ligase.
 
 
 0.963
AEI48207.1
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
 
 
 0.938
AEI48203.1
Hypothetical protein.
 
  
 0.937
AEI48652.1
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase.
 
  
0.928
AEI48205.1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
  
 0.916
AEI50602.1
Cyanophycin synthetase.
  
  
 0.905
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.