STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_4120TonB-dependent receptor. (921 aa)    
Predicted Functional Partners:
AEI49277.1
TonB family protein.
 
 
 0.761
AEI47546.1
Hypothetical protein.
 
 
 0.756
AEI46829.1
TonB family protein.
  
 
 0.737
AEI47598.1
TonB family protein.
  
 
 0.714
AEI47867.1
TonB family protein.
  
 
 0.714
AEI47886.1
Hypothetical protein.
  
 
 0.714
AEI49151.1
Hypothetical protein.
  
 
 0.714
AEI50893.1
Hypothetical protein.
  
 
 0.714
AEI49896.1
Hypothetical protein.
  
     0.567
AEI49276.1
Hypothetical protein.
  
 
 0.517
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.