STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50473.1Methyltransferase type 11. (453 aa)    
Predicted Functional Partners:
AEI50472.1
Regulatory protein ArsR.
   
 0.900
AEI47727.1
Radical SAM superfamily protein.
 
    0.778
AEI51134.1
Metal dependent phosphohydrolase.
      0.720
AEI50235.1
Chorismate mutase.
     
 0.497
AEI46642.1
Argininosuccinate synthase.
  
  
 0.461
AEI50717.1
Glutamate synthase (ferredoxin).
     
 0.459
AEI48619.1
Hydroxymethylbutenyl pyrophosphate reductase.
 
   
 0.422
AEI47102.1
Ornithine aminotransferase.
 
  
 0.420
AEI50471.1
NLP/P60 protein.
       0.417
AEI46532.1
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein.
   
 
 0.415
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.