STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50475.1Phytanoyl-CoA dioxygenase. (275 aa)    
Predicted Functional Partners:
AEI50476.1
Phosphoribosyltransferase.
       0.590
AEI50474.1
Transcriptional regulator, AraC family.
       0.511
AEI49687.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.510
AEI50747.1
Glycosyl hydrolase family 32 domain protein.
 
    0.441
AEI46465.1
GCN5-related N-acetyltransferase.
  
     0.423
AEI48058.1
Outer membrane efflux protein.
  
     0.414
Runsl_3313
Phytanoyl-CoA dioxygenase.
  
     0.414
AEI48986.1
Anthranilate phosphoribosyltransferase-like protein.
  
     0.411
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.