STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50476.1Phosphoribosyltransferase. (235 aa)    
Predicted Functional Partners:
AEI51647.1
DNA protecting protein DprA.
 
 
 0.883
Runsl_5392
ComEC/Rec2-related protein.
 
  
 0.857
AEI49429.1
Mg chelatase, subunit ChlI.
 
  
 0.829
AEI47746.1
UPF0102 protein yraN.
 
    0.746
AEI49544.1
Prephenate dehydrogenase.
   
    0.670
AEI48002.1
Teichoic-acid-transporting ATPase.
   
    0.646
AEI50475.1
Phytanoyl-CoA dioxygenase.
       0.590
AEI50209.1
single-stranded-DNA-specific exonuclease RecJ.
 
   
 0.571
AEI48316.1
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.546
AEI51643.1
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.546
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.