STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50478.1Crossover junction endodeoxyribonuclease ruvC. (196 aa)    
Predicted Functional Partners:
AEI48916.1
Holliday junction ATP-dependent DNA helicase ruvA.
 
 0.992
AEI47292.1
Holliday junction ATP-dependent DNA helicase ruvB.
 
 0.934
AEI47768.1
Holliday junction ATP-dependent DNA helicase ruvB.
 
 0.930
AEI48486.1
DNA polymerase I.
 
   
 0.702
AEI50479.1
Hypothetical protein.
       0.659
AEI49429.1
Mg chelatase, subunit ChlI.
 
   
 0.650
AEI50480.1
Glycosyl transferase family 2.
       0.578
AEI49279.1
UvrABC system protein C.
  
  
 0.576
AEI47746.1
UPF0102 protein yraN.
 
     0.567
AEI48297.1
Regulatory protein recX.
 
  
 0.557
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.