STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50479.1Hypothetical protein. (332 aa)    
Predicted Functional Partners:
AEI50480.1
Glycosyl transferase family 2.
 
     0.811
AEI50478.1
Crossover junction endodeoxyribonuclease ruvC.
       0.659
AEI50481.1
Polysaccharide deacetylase.
 
  
 0.641
AEI47213.1
Glycosyl transferase family 2.
 
     0.602
AEI48634.1
Hypothetical protein.
  
     0.571
AEI47741.1
Hypothetical protein.
  
     0.557
AEI49203.1
Helix-turn-helix domain protein.
  
     0.542
AEI47252.1
Tetratricopeptide TPR_2 repeat-containing protein.
  
     0.527
AEI46516.1
O-methyltransferase-like protein.
 
     0.517
AEI49914.1
Outer membrane efflux protein.
  
     0.514
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.