STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50486.1Ribosomal RNA small subunit methyltransferase E. (234 aa)    
Predicted Functional Partners:
AEI47394.1
Ribosomal protein L11 methyltransferase.
 
  
 0.779
AEI50485.1
Von Willebrand factor type A domain-containing protein.
       0.563
AEI50441.1
tRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.525
AEI49809.1
Ribosomal RNA small subunit methyltransferase H.
 
  
 0.511
AEI46519.1
Methionyl-tRNA formyltransferase.
 
  
 0.510
AEI49455.1
Chaperone protein dnaJ.
  
 
 0.508
AEI50487.1
Response regulator receiver protein.
       0.492
AEI50488.1
Hypothetical protein.
       0.485
AEI50484.1
ATPase associated with various cellular activities AAA_5.
       0.462
AEI51212.1
tRNA modification GTPase mnmE.
  
   
 0.459
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.