STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_4160Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. (444 aa)    
Predicted Functional Partners:
AEI48273.1
Ribosomal RNA large subunit methyltransferase N.
 
  
 0.718
AEI50027.1
ATPase-like, ParA/MinD.
  
   
 0.679
AEI48024.1
Oxygen-independent coproporphyrinogen III oxidase.
 
  
 0.651
AEI46692.1
Methionyl-tRNA synthetase.
 
  
 0.484
AEI50968.1
Polyribonucleotide nucleotidyltransferase.
 
  
 0.475
AEI46735.1
Protein of unknown function UPF0001.
 
     0.450
AEI50926.1
Ribonuclease, Rne/Rng family.
 
  
 0.430
Runsl_0228
GTP-binding protein LepA.
  
  
 0.419
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.