STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50508.1Cold-shock DNA-binding domain protein. (63 aa)    
Predicted Functional Partners:
AEI50507.1
Molybdenum cofactor biosynthesis protein A.
  
  
 0.524
AEI48123.1
Ribosomal protein L25/L23.
   
   0.478
AEI48116.1
30S ribosomal protein S17.
   
 
 0.471
AEI48836.1
Ribosomal protein S12.
   
 
 0.470
AEI50509.1
Hypothetical protein.
       0.468
AEI48121.1
Ribosomal protein S19.
   
 
 0.467
AEI51302.1
RNP-1 like RNA-binding protein.
   
 0.452
AEI48106.1
Ribosomal protein L15.
   
   0.440
AEI48117.1
Ribosomal protein L29.
   
   0.440
AEI48115.1
Ribosomal protein L14.
   
   0.415
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.