STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50520.1TonB-dependent receptor. (729 aa)    
Predicted Functional Partners:
AEI49452.1
Glycosyl hydrolase BNR repeat-containing protein.
  
     0.624
AEI50577.1
Glycosyl hydrolase BNR repeat-containing protein.
  
     0.623
AEI51753.1
Glycosyl hydrolase BNR repeat-containing protein.
  
     0.597
AEI48891.1
Glycosyl hydrolase BNR repeat-containing protein.
  
     0.549
AEI50521.1
Hypothetical protein.
       0.476
AEI50522.1
Phosphodiesterase, MJ0936 family.
       0.476
AEI50523.1
Putative transmembrane transport protein.
       0.433
AEI50524.1
S23 ribosomal protein.
       0.433
AEI48021.1
Hypothetical protein.
  
 
   0.424
AEI51900.1
Glycosyl hydrolase, BNR repeat-containing protein.
  
     0.405
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.