STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50522.1Phosphodiesterase, MJ0936 family. (169 aa)    
Predicted Functional Partners:
AEI50521.1
Hypothetical protein.
       0.773
AEI50587.1
Hypothetical protein.
  
     0.710
AEI50523.1
Putative transmembrane transport protein.
       0.693
AEI50524.1
S23 ribosomal protein.
       0.693
AEI47446.1
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
  
     0.569
AEI50525.1
o-succinylbenzoate--CoA ligase.
       0.550
AEI48791.1
Nucleoside-triphosphatase rdgB.
  
  
 0.479
AEI50520.1
TonB-dependent receptor.
       0.476
AEI50342.1
Peroxidase.
   
 
 0.452
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.