STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50530.1SMC domain protein. (398 aa)    
Predicted Functional Partners:
AEI50529.1
Hypothetical protein.
 
     0.949
AEI46994.1
Hypothetical protein.
 
     0.717
AEI50531.1
Phosphoheptose isomerase.
       0.678
AEI50169.1
AAA ATPase.
 
     0.673
AEI50528.1
3-oxoacyl-(acyl-carrier-protein) reductase.
       0.658
AEI47889.1
Hypothetical protein.
 
     0.656
AEI48916.1
Holliday junction ATP-dependent DNA helicase ruvA.
 
 
    0.599
AEI51123.1
Malic protein NAD-binding protein.
 
      0.586
AEI51934.1
Hypothetical protein.
 
     0.584
AEI49304.1
SMC domain protein.
 
     0.565
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.