STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50531.1Phosphoheptose isomerase. (191 aa)    
Predicted Functional Partners:
AEI50096.1
Histidinol-phosphate phosphatase family protein.
  
 0.995
AEI48928.1
PfkB domain protein.
  
 0.989
AEI47356.1
rfaE bifunctional protein.
   
 0.982
AEI46828.1
GHMP kinase.
     
  0.900
AEI51869.1
Imidazoleglycerol-phosphate dehydratase.
  
  
 0.865
AEI46495.1
PfkB domain protein.
 
  
 0.775
AEI47525.1
Glycosyl transferase family 9.
 
   
 0.728
AEI50529.1
Hypothetical protein.
       0.678
AEI50530.1
SMC domain protein.
       0.678
AEI49834.1
ADP-L-glycero-D-manno-heptose-6-epimerase.
 
  
 0.596
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.