STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50541.1Putative transcriptional acitvator, Baf family. (248 aa)    
Predicted Functional Partners:
AEI47353.1
Pantothenate synthetase.
  
 
 0.954
AEI50136.1
Phosphopantetheine adenylyltransferase.
 
  
 0.929
AEI50586.1
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase.
 
  
 0.929
AEI48519.1
Putative transcriptional acitvator, Baf family.
  
  
 
0.927
AEI51694.1
Acyl carrier protein phosphodiesterase.
     
  0.900
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
       0.819
AEI47354.1
Aspartate 1-decarboxylase.
  
  
 0.702
AEI50543.1
Protein of unknown function DUF1239.
       0.635
AEI50540.1
MscS Mechanosensitive ion channel.
     
 0.545
AEI50221.1
Penicillin-binding protein 2.
 
     0.510
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.