Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50554.1Hypothetical protein. (1006 aa)    
Predicted Functional Partners:
AEI51546.1
Cytochrome c oxidase, cbb3-type, subunit I.
  
 
 0.934
AEI49351.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.858
AEI50553.1
Cytochrome c class I.
 
     0.848
AEI46740.1
Membrane-bound dehydrogenase domain protein.
  
     0.719
AEI49313.1
PHP domain protein.
  
     0.714
AEI51836.1
Putative lipase.
  
     0.705
AEI49038.1
Hypothetical protein.
  
     0.692
AEI47091.1
Hypothetical protein.
  
     0.660
AEI46739.1
Lipolytic protein G-D-S-L family.
  
     0.646
AEI49488.1
Lipolytic protein G-D-S-L family.
  
     0.603
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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