STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50574.1Serine dehydratase alpha chain. (510 aa)    
Predicted Functional Partners:
AEI47917.1
Glycine hydroxymethyltransferase.
  
 
 0.947
AEI47032.1
L-serine dehydratase 1.
  
  
 
0.928
AEI47193.1
Threonine dehydratase.
  
 
 0.921
AEI50839.1
Serine O-acetyltransferase.
     
 0.915
AEI50974.1
Tryptophan synthase alpha chain.
   
 
 0.913
AEI46977.1
Tryptophan synthase beta chain.
     
  0.900
AEI48921.1
Tryptophan synthase beta chain.
     
 0.900
AEI50146.1
CDP-diacylglycerol/serine O-phosphatidyltransferase.
     
  0.900
AEI46858.1
Aspartate kinase.
  
 
 0.841
AEI49423.1
Homoserine kinase.
  
 
 0.833
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.