STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50577.1Glycosyl hydrolase BNR repeat-containing protein. (1070 aa)    
Predicted Functional Partners:
AEI50520.1
TonB-dependent receptor.
  
     0.623
AEI50578.1
Sulfatase.
       0.594
AEI50576.1
Hypothetical protein.
       0.519
AEI50575.1
Hypothetical protein.
       0.503
AEI50579.1
Oxidoreductase domain protein.
       0.486
AEI46821.1
Peptidase M14 carboxypeptidase A.
 
     0.433
AEI49509.1
Peptidase S41.
  
     0.429
AEI49468.1
Peptidase M14 carboxypeptidase A.
 
     0.415
AEI49299.1
Isopenicillin-N epimerase.
  
     0.412
AEI48193.1
Phosphoglycerate mutase.
  
     0.411
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.