STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50580.1Cytochrome c class I. (143 aa)    
Predicted Functional Partners:
AEI51546.1
Cytochrome c oxidase, cbb3-type, subunit I.
 
 0.993
AEI49351.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
 
 0.927
AEI50581.1
Electron transport protein SCO1/SenC.
 
  
 0.678
AEI49357.1
Cytochrome c oxidase subunit I.
  
 0.585
AEI50582.1
Viral A-type inclusion protein.
       0.552
AEI46747.1
Cytochrome c class I.
   
 0.535
AEI49352.1
Polysulphide reductase NrfD.
 
 
 
 0.504
AEI49356.1
Cytochrome c oxidase subunit II.
  
 0.498
AEI50583.1
DNA repair protein RecN.
       0.493
AEI48946.1
FAD dependent oxidoreductase.
  
 
 0.454
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.